PHYSIOTHERAPY AND REHABILITATION (MASTER) (WITH THESIS) | |||||
Master | TR-NQF-HE: Level 7 | QF-EHEA: Second Cycle | EQF-LLL: Level 7 |
Course Code: | 3000002009 | ||||||||
Ders İsmi: | Bioinformatic | ||||||||
Ders Yarıyılı: | Fall | ||||||||
Ders Kredileri: |
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Language of instruction: | |||||||||
Ders Koşulu: | |||||||||
Ders İş Deneyimini Gerektiriyor mu?: | No | ||||||||
Type of course: | Anabilim Dalı/Lisansüstü Seçmeli | ||||||||
Course Level: |
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Mode of Delivery: | Face to face | ||||||||
Course Coordinator : | Dr.Öğr.Üyesi Banu TAKTAK KARACA | ||||||||
Course Lecturer(s): | |||||||||
Course Assistants: |
Course Objectives: | Learn about bioinformatics which is a multidisciplinary field at the cross section of molecular biology and computer science. Become knowledgeable about the storage, retrieval, sharing and use of biological data, information, and various tools. Gain familiarity with algorithms used in bioinformatics. |
Course Content: | Overview of bioinformatics, Access to Sequence Data and Literature Information, Pairwise Sequence Alignment, Basic Global and Local Alignment Search Tool (BLAST), Advanced BLAST Searching, Multiple Sequence Alignment, PSI-BLAST and Hidden Markov Model (HMM), Phylogeny. |
The students who have succeeded in this course;
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Week | Subject | Related Preparation |
1) | Introduction to computational biology | Textbook |
2) | Protein sequence analysis | Textbook |
3) | Nucleic acid sequence analysis | Textbook |
4) | Phylogenetic analysis | Textbook |
5) | Binding motifs, Hidden Markov models, 3D structure estimations and modeling | Textbook |
6) | An overvıew of emerging fields; expression analysis, digital image processing, modeling of the cellular signalling pathways | Textbook |
7) | Biomedical information technology; design of the modern information systems related with the biological and medical data | Textbook |
8) | Ara sınav / Midterm | |
9) | Data exchange protocols and computer modeling architecture | Textbook |
10) | Computational neutobiology;; introduction to the nerve system, physiology of the nerve and muscle cells, delivery of signal through synapses and the perception at muscle cells | Textbook |
11) | Advanced biological modeling: The arrangement and analysis of real mathematic models describing biological and engineering processes | Textbook |
12) | Computer algebra systems | |
13) | Methods of disorder, introduction to the optimization | |
14) | Presentation of projects | |
15) | Final Exam |
Course Notes / Textbooks: | Bioinformatics: Sequence and Genome Analysis, by D.Mount, 2004 Structural Bioinformatics, Bourne PE and Weissig H, John Wiley & Sons, 2003 Bioinformatics: Sequence Alignment and Markov Models, by K.R.Sharma, McGraw Hill 2009. Computational Text Analysis for Functional Genomics and Bioinformatics, RayChaudhuri S, Oxford U Press, 2006 |
References: | Bioinformatics: Sequence and Genome Analysis, by D.Mount, 2004 Structural Bioinformatics, Bourne PE and Weissig H, John Wiley & Sons, 2003 Bioinformatics: Sequence Alignment and Markov Models, by K.R.Sharma, McGraw Hill 2009. Computational Text Analysis for Functional Genomics and Bioinformatics, RayChaudhuri S, Oxford U Press, 2006 |
Ders Öğrenme Kazanımları | 1 |
2 |
3 |
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Program Outcomes | |||||||
1) In the field of physiotherapy and rehabilitation, student can follow the current approaches in the literature and apply these gains in academic and clinical studies, along with having full knowledge of evidence-based basic assessment, evaluation and treatment. | |||||||
2) In physical therapy and rehabilitation programs, student carries out his professional studies at the highest level, in the role of a physiotherapist, in an independent or multidisciplinary approach and within the framework of ethical principles. | |||||||
3) Using his high research skills, student takes part in scientific research and projects, interprets the outputs of these studies based on appropriate statistical methods and realizes these outputs in the clinic. | |||||||
4) Identifies clinical problems with his/her experience in different disciplines of physiotherapy and rehabilitation, and uses his knowledge, skills and experience to solve these problems. | |||||||
5) Has awareness and responsibility in public health issues and applies preventive and improving physiotherapy and rehabilitation interventions. | |||||||
6) She/He has mastered at least one foreign language in the European language portfolio and uses this knowledge to improve himself and his profession in professional and academic studies. | |||||||
7) By using the research skills in the field of Physiotherapy and Rehabilitation, she/he approaches the interventions with a critical point of view, reaches the correct information and practices and uses them in her/his professional life. | |||||||
8) It follows the technological developments in its field and carries out its applications with an innovative and creative perspective. |
No Effect | 1 Lowest | 2 Low | 3 Average | 4 High | 5 Highest |
Program Outcomes | Level of Contribution | |
1) | In the field of physiotherapy and rehabilitation, student can follow the current approaches in the literature and apply these gains in academic and clinical studies, along with having full knowledge of evidence-based basic assessment, evaluation and treatment. | |
2) | In physical therapy and rehabilitation programs, student carries out his professional studies at the highest level, in the role of a physiotherapist, in an independent or multidisciplinary approach and within the framework of ethical principles. | |
3) | Using his high research skills, student takes part in scientific research and projects, interprets the outputs of these studies based on appropriate statistical methods and realizes these outputs in the clinic. | |
4) | Identifies clinical problems with his/her experience in different disciplines of physiotherapy and rehabilitation, and uses his knowledge, skills and experience to solve these problems. | |
5) | Has awareness and responsibility in public health issues and applies preventive and improving physiotherapy and rehabilitation interventions. | |
6) | She/He has mastered at least one foreign language in the European language portfolio and uses this knowledge to improve himself and his profession in professional and academic studies. | |
7) | By using the research skills in the field of Physiotherapy and Rehabilitation, she/he approaches the interventions with a critical point of view, reaches the correct information and practices and uses them in her/his professional life. | |
8) | It follows the technological developments in its field and carries out its applications with an innovative and creative perspective. |
Anlatım | |
Course | |
Homework | |
Seminar |
Yazılı Sınav (Açık uçlu sorular, çoktan seçmeli, doğru yanlış, eşleştirme, boşluk doldurma, sıralama) | |
Homework | |
Uygulama | |
Sunum |
Semester Requirements | Number of Activities | Level of Contribution |
Homework Assignments | 7 | % 10 |
Midterms | 1 | % 30 |
Semester Final Exam | 1 | % 60 |
total | % 100 | |
PERCENTAGE OF SEMESTER WORK | % 40 | |
PERCENTAGE OF FINAL WORK | % 60 | |
total | % 100 |
Activities | Number of Activities | Duration (Hours) | Workload |
Course Hours | 15 | 3 | 45 |
Study Hours Out of Class | 15 | 5 | 75 |
Homework Assignments | 10 | 4 | 40 |
Midterms | 1 | 3 | 3 |
Final | 1 | 3 | 3 |
Total Workload | 166 |