OCCUPATIONAL THERAPY (MASTER) (WITH THESIS)
Qualification Awarded	Program Süresi	Toplam Kredi (AKTS)	Öğretim Şekli	Yeterliliğin Düzeyi ve Öğrenme Alanı
Master's ( Second Cycle) Degree	2	120	FULL TIME	TYÇ, TR-NQF-HE, EQF-LLL, ISCED (2011):Level 7 QF-EHEA:Second Cycle TR-NQF-HE, ISCED (1997-2013): 31,72

Ders Genel Tanıtım Bilgileri

Course Code:

3000002009

Ders İsmi:

Bioinformatic

Ders Yarıyılı:

Fall

Ders Kredileri:

Theoretical	Practical	Labs	Credit	ECTS
3	0	0	3	6

Language of instruction:

Ders Koşulu:

Ders İş Deneyimini Gerektiriyor mu?:

Other Recommended Topics for the Course:

Type of course:

Anabilim Dalı/Lisansüstü Seçmeli

Course Level:

Master

TR-NQF-HE:7. Master`s Degree

QF-EHEA:Second Cycle

EQF-LLL:7. Master`s Degree

Mode of Delivery:

Face to face

Course Coordinator :

Dr.Öğr.Üyesi Banu TAKTAK KARACA

Course Lecturer(s):

Course Assistants:

Dersin Amaç ve İçeriği

Course Objectives:	Learn about bioinformatics which is a multidisciplinary field at the cross section of molecular biology and computer science. Become knowledgeable about the storage, retrieval, sharing and use of biological data, information, and various tools. Gain familiarity with algorithms used in bioinformatics.
Course Content:	Overview of bioinformatics, Access to Sequence Data and Literature Information, Pairwise Sequence Alignment, Basic Global and Local Alignment Search Tool (BLAST), Advanced BLAST Searching, Multiple Sequence Alignment, PSI-BLAST and Hidden Markov Model (HMM), Phylogeny.

Learning Outcomes

The students who have succeeded in this course;

Learning Outcomes

1 - Knowledge
Theoretical - Conceptual
1) Students will learn the usage of bioinformatics.
2 - Skills
Cognitive - Practical
3 - Competences
Communication and Social Competence
Learning Competence
1) Students will understand the collection and processing data.
2) Students will be able to use biological databases.
Field Specific Competence
Competence to Work Independently and Take Responsibility

Ders Akış Planı

Week	Subject	Related Preparation
1)	Introduction to computational biology	Textbook
2)	Protein sequence analysis	Textbook
3)	Nucleic acid sequence analysis	Textbook
4)	Phylogenetic analysis	Textbook
5)	Binding motifs, Hidden Markov models, 3D structure estimations and modeling	Textbook
6)	An overvıew of emerging fields; expression analysis, digital image processing, modeling of the cellular signalling pathways	Textbook
7)	Biomedical information technology; design of the modern information systems related with the biological and medical data	Textbook
8)	Ara sınav / Midterm
9)	Data exchange protocols and computer modeling architecture	Textbook
10)	Computational neutobiology;; introduction to the nerve system, physiology of the nerve and muscle cells, delivery of signal through synapses and the perception at muscle cells	Textbook
11)	Advanced biological modeling: The arrangement and analysis of real mathematic models describing biological and engineering processes	Textbook
12)	Computer algebra systems
13)	Methods of disorder, introduction to the optimization
14)	Presentation of projects
15)	Final Exam

Sources

Course Notes / Textbooks:	Bioinformatics: Sequence and Genome Analysis, by D.Mount, 2004 Structural Bioinformatics, Bourne PE and Weissig H, John Wiley & Sons, 2003 Bioinformatics: Sequence Alignment and Markov Models, by K.R.Sharma, McGraw Hill 2009. Computational Text Analysis for Functional Genomics and Bioinformatics, RayChaudhuri S, Oxford U Press, 2006
References:	Bioinformatics: Sequence and Genome Analysis, by D.Mount, 2004 Structural Bioinformatics, Bourne PE and Weissig H, John Wiley & Sons, 2003 Bioinformatics: Sequence Alignment and Markov Models, by K.R.Sharma, McGraw Hill 2009. Computational Text Analysis for Functional Genomics and Bioinformatics, RayChaudhuri S, Oxford U Press, 2006

Ders - Program Öğrenme Kazanım İlişkisi

Ders Öğrenme Kazanımları	1	2	3
Program Outcomes
1) Gains the skills for evaluation planning and intervention with the foundation of the occupational perspectives of occupational knowledge and skills based on evidence in the field of occupational therapy
2) Understands the concepts of protection, treatment and development in the principles of intervention in occupational therapy, thinks of his/her professional role as an occupational therapist, and fulfills the requirements of the profession by using evidence-based information on these interventions and gains related skills.
3) Gains the ability to work in the field of academic research and intervention that can provide consultancy and direct service with information technologies and international language skills by understanding the personalizability and the creative features of the science of occupational therapy.
4) It exhibits a protective attitude towards ethical standards, ethical values, rights and professional originality.
5) Can work effectively with interdisciplinary stakeholders and external professional stakeholders in the field of work. He / she ensures the supervision of students in the intervention field and clinic he / she is in and can transfer the experience that will contribute to their education. Can transfer the unique skills of occupational therapists to students in the field of clinical practice.
6) Develops behaviors in accordance with the development processes in social service values of occupational therapy services and lifelong learning and teaching processes in the fields of social intervention.
7) Can critically address universal models in rehabilitation practices with his competent knowledge in multidisciplinary occupational therapy approaches.
8) It supports the participation and representation of disadvantaged people, groups and communities (street children, immigrants, prisoners, homeless etc.) in their social roles in society and plays an active role in the development and support of the universal values of these rights.
9) Analyzes the impact dynamics on self-care, productivity and leisure activities created by cultural, physical, social environment and economic, political, geographic and demographic factors; It follows up-to-date approaches developed in this regard, informs the public about this issue and provides training on this subject.
10) By reaching the breadth of knowledge in the field of medical, sociological and theoretical science in the field of occupational therapy, nationally and internationally, they can criticize their knowledge and practices in the field of occupational therapy and participate in their development.

Ders - Öğrenme Kazanımı İlişkisi

No Effect	1 Lowest	2 Low	3 Average	4 High	5 Highest

	Program Outcomes	Level of Contribution
1)	Gains the skills for evaluation planning and intervention with the foundation of the occupational perspectives of occupational knowledge and skills based on evidence in the field of occupational therapy
2)	Understands the concepts of protection, treatment and development in the principles of intervention in occupational therapy, thinks of his/her professional role as an occupational therapist, and fulfills the requirements of the profession by using evidence-based information on these interventions and gains related skills.
3)	Gains the ability to work in the field of academic research and intervention that can provide consultancy and direct service with information technologies and international language skills by understanding the personalizability and the creative features of the science of occupational therapy.
4)	It exhibits a protective attitude towards ethical standards, ethical values, rights and professional originality.
5)	Can work effectively with interdisciplinary stakeholders and external professional stakeholders in the field of work. He / she ensures the supervision of students in the intervention field and clinic he / she is in and can transfer the experience that will contribute to their education. Can transfer the unique skills of occupational therapists to students in the field of clinical practice.
6)	Develops behaviors in accordance with the development processes in social service values of occupational therapy services and lifelong learning and teaching processes in the fields of social intervention.
7)	Can critically address universal models in rehabilitation practices with his competent knowledge in multidisciplinary occupational therapy approaches.
8)	It supports the participation and representation of disadvantaged people, groups and communities (street children, immigrants, prisoners, homeless etc.) in their social roles in society and plays an active role in the development and support of the universal values of these rights.
9)	Analyzes the impact dynamics on self-care, productivity and leisure activities created by cultural, physical, social environment and economic, political, geographic and demographic factors; It follows up-to-date approaches developed in this regard, informs the public about this issue and provides training on this subject.
10)	By reaching the breadth of knowledge in the field of medical, sociological and theoretical science in the field of occupational therapy, nationally and internationally, they can criticize their knowledge and practices in the field of occupational therapy and participate in their development.

Öğrenme Etkinliği ve Öğretme Yöntemleri

Anlatım
Course
Homework
Seminar

Ölçme ve Değerlendirme Yöntemleri ve Kriterleri

Yazılı Sınav (Açık uçlu sorular, çoktan seçmeli, doğru yanlış, eşleştirme, boşluk doldurma, sıralama)
Homework
Uygulama
Sunum

Assessment & Grading

Semester Requirements	Number of Activities	Level of Contribution
Homework Assignments	7	% 10
Midterms	1	% 30
Semester Final Exam	1	% 60
total		% 100
PERCENTAGE OF SEMESTER WORK		% 40
PERCENTAGE OF FINAL WORK		% 60
total		% 100

İş Yükü ve AKTS Kredisi Hesaplaması

Activities	Number of Activities	Duration (Hours)	Workload
Course Hours	15	3	45
Study Hours Out of Class	15	5	75
Homework Assignments	10	4	40
Midterms	1	3	3
Final	1	3	3
Total Workload			166